NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10000949

Scaffold Ga0315315_10000949


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10000949 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26048
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (68.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017322Metagenome241Y
F026408Metagenome / Metatranscriptome198Y
F077384Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_1000094937F017322AGGAGVSNKFNIKSWKQFQMLNEGITDVVYHYTNGLEKGAKILEQNKFLASGGFTKDVESELGKGKLYYFSTARTPANAYTGNYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDKPTRRAGRSIEAYQMKGLKDGVAVAEQRNIPYYIHIDKQTWPQVEVGKKKALTKLSDFMEELEESGVTVNEPPGVSRPREDGALQEFGEDEIFLYVQAAQDILAGKKEFEGANVKGKIKYNDESKRKDNGKVMFRNLTGSPNMQGRFYREIDNPLHNVSSNPKARPTLELLATLMRSTKQKTIKDFETYLNQVYKNNHGDQ
Ga0315315_1000094941F026408N/AMALLVVLVMGALIGISAMLLFSTSNMEMMIAGNTNRLNQAKISAASGLSHFIALELDYVTLRQRADDLESIQAIPRTQLGDKTFYEVNVHFCCSLSEGQYIVESTGYYMKGDKIISSKTSRSLFVSSQTN
Ga0315315_1000094945F077384N/AIVEYERADRTGGINFGVVMGAEKGFDDMLVLDVVFPRGRLYTFACHCQPYREWLDEDSI
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