NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10009907

Scaffold Ga0315315_10009907


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10009907 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8776
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051932Metagenome143Y
F060828Metagenome132Y
F103279Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_1000990723F103279N/AMVKSIKRICYKAVEWQMLRVYAIIMTGTFLSLWVPAMVNVVYQMLKIYGVI
Ga0315315_100099078F060828N/AMKLNGHEQDIVSEALKLYVTEINKEIEALEAEGKRPIFTVDYYPEVAKGIKSKLNINI
Ga0315315_100099079F051932N/AMFDITDQDYDTLTKLRWLQVNELAIKYSNNQEFGKEVRRLIKK

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