NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10125377

Scaffold Ga0315315_10125377


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10125377 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2393
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y
F103296Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_101253772F008747AGGVTAVGVPLIAPVEVSKDKPAGSDGETDQEVIEPPLTVGVTVVIEVPFVNVNEFGL
Ga0315315_101253773F008747N/AVADVVTAVGVPLTAPVEESKDNPAGSDGETDQEVIGPPLTVGVAVVIVVPLVNVNEVGL
Ga0315315_101253776F032291N/AVEESKDKPAGRDGETDQEVIVPPLEVGVAVVIAVPFVNENEDWLYAIELGATSFTTMVRTAVSLPPVLLAVTV
Ga0315315_101253778F103296GGAVSEEGATSLMTMVTLAVSLPPVLLAVMVYDAEVVMAVGVPLIAPVEESRASPAGSDGETDHVVIVPPLAVGVTA
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