NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10237046

Scaffold Ga0315315_10237046


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10237046 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1702
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042905Metagenome / Metatranscriptome157N
F060814Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_102370461F060814GAGMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDANQLQRAEDFIKTITNQGILVDEILIGPTDFLASENFYEVMPQLEYIINDNSPILAFVSTLIDGDIVRFCDWVTGRINTDTEIEIGIATNPHKFFEKKYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKQFNTILDFIPSVSRSHKS
Ga0315315_102370462F042905AGAAGGMIVTLNSTNAGYYTYDPELSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNFTKADDLETLYNLLAGGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQSYWLIKEKLDKIWSLYRHIKRIPDIDFKIVLDVDKYLNGELDDWYKKLKLFEHGSVQFRVNYYKGVFDRISYNELCEKTYEDFNAPVVITPSFLTDRNARGKVKQHLSNFRKDLLEQKIDSKWRDYYTFFDAKFNGLGCQNYSFYGGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLTSCVAIKEYMHATH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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