Scaffold Ga0308173_10103182

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308173_10103182

Scaffold Ga0308173_10103182

Overview

Basic Information
Taxon OID	3300032074 Open in IMG/M
Scaffold ID	Ga0308173_10103182 Open in IMG/M
Source Dataset Name	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2222
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.8864	Long. (^o)	-122.2981	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308173_101031822	F030254	AGGAGG	MNHAFFALTAVGLAGLSGIGISAQTKPIQTAQLVTTAPDYSREAGVFSQWLNPGAPQCVAVSKISSVSRVTKLTPQQFEFVRALYIAIPPMSRQLPPGDSAVVASADGRSMIALVSGGETCARFLAPDFVLSMLSEVGKGETEAIGTPI
Ga0308173_101031823	F031230	GGAGG	MKHALTGLLLAGTSFAFVAGTPAAAQVAGNPGDLHTPTVYTTEVHANTYGYSPGYGGPIGPLGAIAAPITAPVAMAAGGEPRGGACGVNQDFNGRLTALCGL

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