NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326721_10000042

Scaffold Ga0326721_10000042


Overview

Basic Information
Taxon OID3300032080 Open in IMG/M
Scaffold IDGa0326721_10000042 Open in IMG/M
Source Dataset NameSoil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117350
Total Scaffold Genes136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (72.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)36.36Long. (o)-97.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F081191Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0326721_10000042101F081191N/AVSRRSKLPPPEEIVAAIVELADDGFCRRNELVQRFPKLGARDQRRALRRAIAQGLVIERRGPDGGFHLAVSSEGWNLHRSG
Ga0326721_10000042103F016854GGGGGMARSNVKSVPKPGEVWLSCPPYLMLARIVDVNLTAEPPVVSYELHDEDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0326721_10000042131F031439AGCAGGMYFIPLALILFVALVAVAWSPIFALIIFVIGFVAFLAFAGMNRRADEKLAPPEQPGRQPQHENETPTGVWGERRPS
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