NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10000008

Scaffold Ga0315905_10000008


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10000008 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)196405
Total Scaffold Genes185 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (47.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039479Metagenome163Y
F066440Metagenome126Y
F093245Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000000857F093245N/AMWPDAVKSVYVLCHPEKEKARYDRLMPHLAAVGIPADRIKICAPTWGSDLTVDQIFAGYNPYLKREVPTFTFKGASLSRGEISLGLNFAAAVKAAAEGPEGLIMTLESDVWLREDFVPRLVALLADAAGRPWDYISLGEGVGTRPPGAQFSYYAPSKAYEPPHQWVFRCTDSMLFTSDYMKRLNGTFLPFREIIDWEMNYQLMRHRGKALWADPPLAEQGTCNSRLITSLPA
Ga0315905_1000000863F066440N/AMAGSGKKTLLREALIKVAELRGLPFSIQMRGTGATGATGDVTEAGATDEGADPEDSSAGQFMMETSLVHMGLDIARMSMQDKQILRPVLTNLGQGSQVMAGEQGRGARILVIYHAHLLSSESVLLLQACLEQNEGDLSIWLTSELPVPQRIRDWFVEIGVAGEDRAFENFKNIVGIQPADWPTIFKGIIDKWRRADSPKIQDVKEVKAYVYEMLMRNLRWVEATHYILDVLLSHPAITEVQRKTAISALAKCEATGGGYTIPSYRIPILWESLFLQLRSIFTNAEADAPPSSRRAGKPRKRNMEASRGEVGGMPA
Ga0315905_1000000898F039479N/AMTDLSGTGSKGFVFEELMDITLRKLIQPLASKGISARLLNEQQIRDEFGEQSLNGVDHFFLLESAEGPVLFLLQEKWKFVTNQREVSQFLDCCARILARMPDFKGRVIRLWVTRTQPTANGEKSLSEGGAYVVQTSTSMCFLAQMTGQFICELLGDRTLCADMITTMPNLLSGDTPLEPLTRDHQEKAIPANAIHPAKIKVCVVRKA
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