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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032092 Open in IMG/M |
| Scaffold ID | Ga0315905_10001708 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23437 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (16.67%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002778 | Metagenome / Metatranscriptome | 530 | N |
| F003786 | Metagenome / Metatranscriptome | 468 | N |
| F008078 | Metagenome / Metatranscriptome | 339 | Y |
| F008815 | Metagenome / Metatranscriptome | 327 | Y |
| F009808 | Metagenome | 312 | N |
| F019647 | Metagenome / Metatranscriptome | 228 | N |
| F038230 | Metagenome | 166 | N |
| F052594 | Metagenome / Metatranscriptome | 142 | N |
| F054865 | Metagenome / Metatranscriptome | 139 | N |
| F090393 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315905_1000170811 | F008078 | N/A | MKQTPKEKAKELFDHYYILIQEIGGELGQEILVSILAKHCALFAAREVLQDKWNTEDYDQYHYWEEVQHEIENYEE |
| Ga0315905_1000170812 | F038230 | N/A | MKNKQNRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREERQKYIEYQRTYHKLKQFTNE |
| Ga0315905_1000170813 | F003786 | N/A | MSNLTQYQPRNSDEQAIISARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQKDMEERGRVEREKLYAEFPNMIKDFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKKIEHGNMKRAVVIAQKLAVWRKVIKK |
| Ga0315905_1000170816 | F019647 | AGAAG | MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEQQTMPVQTEQSEKPDLAAMVFEMSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR |
| Ga0315905_1000170817 | F090393 | N/A | MALDRKTSCRVSFYDHEQEQIQSWAITGSARLALLINTISHEKNKIETYKDEFQSSLDYLIHDLKKFLETPYTTEDNA |
| Ga0315905_1000170819 | F002778 | N/A | VKEYNAQMIEIKAFCDEVNAWISTAPSAEHLEECDDYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRSVKQLLLITSDNYRTLLSSFRQERILVGHMTT |
| Ga0315905_1000170822 | F054865 | N/A | MEAKTNRFIIKYREGIVSVAAKDVAEAIEKFKELRIETCAKELTIVPEDEMYKRREEIFRKE |
| Ga0315905_1000170823 | F009808 | N/A | MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQTTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRKVVREVTKTNISSTQPIKFTMAVCFILTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEANESYTIDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGIWKYNNKYYDYIGLLKFVSKYVKRNFLNKKINYGKIRRH |
| Ga0315905_1000170826 | F052594 | AGG | MAAKTYGLDKKQIALCDAMIAKYPKGIRTNNVVSSASTLVSFYNSKDENNKQFYQYMNPERMVSLLWQVVKINNEKEDVKEAAVRMLNKLLQDIVVN |
| Ga0315905_1000170832 | F008815 | N/A | MPNYTERTVLSKPRDFAEVANNAGSGGVVNNNVTETINNVTVNGSAVSIFNQEFLNTTSAILTWTQNSGKLPTTNLLAAIHVYQNGQKLLDSQYSITLPATITIDSNTHYDGSNYIVFAININ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |