NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10003501

Scaffold Ga0315905_10003501


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10003501 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16187
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (82.61%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001043Metagenome / Metatranscriptome794Y
F001507Metagenome / Metatranscriptome681Y
F002935Metagenome519Y
F003379Metagenome / Metatranscriptome490Y
F004051Metagenome / Metatranscriptome455Y
F006744Metagenome / Metatranscriptome365Y
F007644Metagenome / Metatranscriptome347Y
F017134Metagenome / Metatranscriptome242Y
F017829Metagenome / Metatranscriptome238Y
F019325Metagenome / Metatranscriptome230Y
F020168Metagenome / Metatranscriptome225Y
F031497Metagenome / Metatranscriptome182Y
F036238Metagenome170Y
F045756Metagenome152Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100035011F031497AGGCGGMSKSPEIKVAESLTNLMDDHWFNPTVFGRYLAEQPLHTIDRVMEMIASVISEQAKIYNVYLNRNETTEGLSLANELNECIKAYQVDNNLTNLKLPSRSFNVPKREEPKTTYKFGWRSEELDPFN
Ga0315905_1000350111F036238GGCGGMGDRANFGFKQSNGETIVLYGHWAGHRMLENLADAVNAAGPRWTDESYATRICISQLVGDEWTSETGWGLSVNRILDNEHKIPVIDWENKTFSLHEEAPWSESDSNKVQGMQDEPIFSMALDAFVTKYSSQSVMV
Ga0315905_1000350113F001043AGGAGMSDYKDGFQDGYKFAREELMERLAEIDITDIDSWVLDRLSEMIEGNQI
Ga0315905_1000350114F000311GAGGMYFELTAPDRLSLEMAYWDAQITGLSPEFMPPLTFNIGTGSIEKVSRLRDKYNLVESYTSDYEPTEIYNRR
Ga0315905_1000350116F002935GAGGMSYRTKGYMGNVLDGKKLATIANEILKAQYNNPSDITVDNLLLIELEEKNAFGDPKYAVVCSEGVGWEQDDYGCLEIPTNIGPMGLWNGRVFISVDKVKACQTIFKEDISDYIRVFGDRLDRNCSLWQSKMSVAPATILA
Ga0315905_1000350119F017829AGGMANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLIKNATGIELGS
Ga0315905_100035012F000852GGAMATKREYLKQQGITVGVRGRFSGAAKVALAEAMAKGITFTAETPSKKAK
Ga0315905_1000350121F004051GAGGMTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAKTLLGA
Ga0315905_1000350124F020168GAGMIEIIGALIAITLILFLCSPIVLAVYMWNAAKVDTDNDGHEDIPNRW
Ga0315905_1000350126F017134N/AMSVHSAILATQPTKGQLMDKFIVACLNYEICGAQETFEIESDYEVYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY
Ga0315905_1000350129F076101GGAGMYKITLAYDGNAPHWQKDYANEFEAWKDFFAFTDWGFANEYSTVNLYNSEMKCFTKIFYREERKVVEVK
Ga0315905_100035013F000441AGGAGGMKMSDQYINEQLNKAQQLLWGGSETENIEAHNIIAKLIKDRVEQADLI
Ga0315905_1000350133F006744AGAAGGMNLDEFKAHIIATREASKAEALSVLSATMSVSTTTKGDN
Ga0315905_1000350137F045756GGAGMTKYNVLISYVVEADSEISAVFALNKSLYTLSETELEKFNAFKVEEIN
Ga0315905_1000350141F019325AGGAGMTQLTEQLFSTIVHEYHNGGVSSSYGLDTYTRKQVLAYLIRSKGCECIACI
Ga0315905_1000350145F003379AGGAMKKVWALMFLIATAILSGAMLSKFLNWAGEREIFDFDLNEDIDNEELSAL
Ga0315905_100035015F000263GAGGMNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAIEDESEEAMDSMDRTRCEGALDTLVSLYNLTYQLSFAIGAKNDN
Ga0315905_100035017F007644GGAGMTRSSQFMEYMKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVATDIMNSSNERY
Ga0315905_100035019F001507AGGTGGMETKPYAIHELVTAIYEDNYSHFDFMDNMNGGDCDCNLHQAMNLIAMYQEGLVDES
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