NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10124109

Scaffold Ga0315905_10124109


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10124109 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2590
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031494Metagenome182Y
F070106Metagenome123N
F105174Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_101241092F031494N/AMQVIITLSTDVSPDIADLILGYKLEGGYSIDYALNSLVSYYKGQEIIIFNFNKYFVLDNRWSGYKIDDYGTKIVINFK
Ga0315905_101241093F105174N/AMLQVTEKVKNRTYEISLQSTGIVVGLFVNFDGFFYYEPAKDRTWGFWSEEFLKSLSNEIEKLNHPINKSIEEYFIKNEER
Ga0315905_101241094F070106N/AMKKGKKIFVIFNPYTNGYYDGYGYFREILFSKTYTEKEVATSEMWKILDESIGKTFLKIKSFHTFS
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