Basic Information | |
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Taxon OID | 3300032092 Open in IMG/M |
Scaffold ID | Ga0315905_10159542 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2243 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F065550 | Metagenome / Metatranscriptome | 127 | N |
F094947 | Metagenome / Metatranscriptome | 105 | N |
F098695 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315905_101595421 | F094947 | N/A | MNYPVKNALRQLVCKVYDAATKDKQTITTVSLPGDCWEFEHYINDNYNFRKWFGYAIKELKSYCFEKNKIVFNTNQQYSKDLTESGIFEYLNEEINEIPTIWAKSECVFSWFDFCGNPTFFNLDYCNNKTAQQTHLFTFNLAWRCSDNIPTAILINSKYKNKQQAILDYFQDLISTKYQEFGYQIVFSIDYVSNHAPMVLICISNDPAVILAELDICKTSHRKTEKLPDPPALIKVQKDKQDIYSDLL |
Ga0315905_101595422 | F098695 | N/A | MIVDKISSQAGLARFASFTYQSKTTGEVARYTIQLGFSYKNCLEKSKLALEIESGSLSGLDKQAAEELLNSFTSSLNGTQENYTKEHVYVDVSDSSGKTVQGIKRNINDGSLQIFGLLHSKVQITPPTIEDKPVKSRPLTIAKNKLRKDLPVGKFREFALENLNVVKLNGETLELA |
Ga0315905_101595424 | F065550 | GGA | MKMLIDTIDLTIPLRYYKGWNIEFTTKTERFNSPILGLFGFSSVIDLEKAIDYALEKRAKTE |
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