NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10159542

Scaffold Ga0315905_10159542


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10159542 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2243
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065550Metagenome / Metatranscriptome127N
F094947Metagenome / Metatranscriptome105N
F098695Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_101595421F094947N/AMNYPVKNALRQLVCKVYDAATKDKQTITTVSLPGDCWEFEHYINDNYNFRKWFGYAIKELKSYCFEKNKIVFNTNQQYSKDLTESGIFEYLNEEINEIPTIWAKSECVFSWFDFCGNPTFFNLDYCNNKTAQQTHLFTFNLAWRCSDNIPTAILINSKYKNKQQAILDYFQDLISTKYQEFGYQIVFSIDYVSNHAPMVLICISNDPAVILAELDICKTSHRKTEKLPDPPALIKVQKDKQDIYSDLL
Ga0315905_101595422F098695N/AMIVDKISSQAGLARFASFTYQSKTTGEVARYTIQLGFSYKNCLEKSKLALEIESGSLSGLDKQAAEELLNSFTSSLNGTQENYTKEHVYVDVSDSSGKTVQGIKRNINDGSLQIFGLLHSKVQITPPTIEDKPVKSRPLTIAKNKLRKDLPVGKFREFALENLNVVKLNGETLELA
Ga0315905_101595424F065550GGAMKMLIDTIDLTIPLRYYKGWNIEFTTKTERFNSPILGLFGFSSVIDLEKAIDYALEKRAKTE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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