NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10334027

Scaffold Ga0315902_10334027


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10334027 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1411
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075448Metagenome119Y
F076016Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0315902_103340271F075448N/AVNTTAQHCAAAMGVKTWCLVPTWHQWRYAQPSMPWYRHMRIIYQDNDTWKEVINKVAKQLNGTW
Ga0315902_103340273F076016AGGMQLILSGIERRDNVLKRLQKHCKGILTREWDGKSIPVVVGNLQGADKIQIACREQKIPYILIDHGYFHRSSDLEWARFCVSNYHCTDWRVSDRETPKVHEYRNGENVVVLPPAEKISYIYNASLWLDTTIEEIRKHTERKIVIKRKGEGDFKQTLEKAHVIVSFGSVADVE
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