NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10342795

Scaffold Ga0315903_10342795


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10342795 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1241
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F004115Metagenome / Metatranscriptome452Y
F005878Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
Ga0315903_103427951F004115N/ARISISLDTPLSWADADFQHQKIGTTLSLTRNHNQHQWCDYCKMRWGQLKDGTWHHKAQVPAVWKVQSETPTRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0315903_103427952F000645GAGMSNYLDDYVSVQDRLREFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGYFAKPNQTPKKPIQTTKPALAEFVKEQRPNDPEPIVWDVSAIAEEFGAEVIDEIPICNHGPMILKQGSKEGKEYRGSAPSAISPVNVRLN
Ga0315903_103427953F005878N/AMDENRIRWQVGVSEVINEMHPFKCGPCKKVTPHHYITKYESEIQEGDWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAATCRICKIADGQERIKERYWNGNATLERF
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