NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10446106

Scaffold Ga0315903_10446106


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10446106 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002355Metagenome / Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0315903_104461062F002355N/ALDYISINLLLPFAGINLAASVVQHPLTNCRLYYSQITVDTHKAIDYVQRNRNKKVIFRSFVTNSYNGIGVGSSFNALVNSGIVHPTAVLICPFIAATTGTNSGFGDYQWKSPFDTCPATLSPLSLINLQVGIGGQNILNSTLSGTYENFLQQVNLAEQLTSSDFGVATGLISQGYWEQSKWYFVNVERGNIADKLQPRNINVSFNNNSNVPIDVIIFTFYNDQLTIDVETGIVTK
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