NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10000001

Scaffold Ga0315277_10000001


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10000001 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680520
Total Scaffold Genes762 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)528 (69.29%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004454Metagenome / Metatranscriptome437Y
F006925Metagenome362Y
F008290Metagenome335Y
F010662Metagenome300Y
F038454Metagenome166Y
F072813Metagenome / Metatranscriptome121Y
F093177Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315277_10000001374F010662GAGGMFFRKLLMSISEALIIYGLIVVGYGILAIHITQTWSGDWRVDRNLPAWFTLDMFMMFSFALSFLGFIAWRYLKYAEQAARNK
Ga0315277_10000001414F038454AGGAGGLSDETDEPRRVAYRDGYNEGYRKGYEKGFEEGLEKGKRKNVHTHVQFLRIGCECGATNYHPIFENKLVINEDEERRCFGCGKIIARDDILSYYSRLQSNNRT
Ga0315277_10000001559F093177AGGGGGMQSEVRGRLEKELDRLLKPEVINMVVKISENLPLKSVEDFCLGYIVGDIVVGAYEESRVRYGRDVNLEEMDEALNLLYRRAIEIKGAIKLATGK
Ga0315277_10000001624F072813AGCAGMYQYSILYQGSIVNSEIPLVETIMDSQQQKQETQPENTSKQSSFMKAVLIKKGEYTLGNSIVLPSFNICLLGEEGTVLIPAPNVLAILGVGNKDIKCTKCGYILAMKIKRQQIQEIAIKCPSCSELNEL
Ga0315277_10000001634F004454AGGAVDKSRRTVVEVRNDLHREIRKLALLNDLRIYELTNAIIEEAVANQEKMKLLIKKMKL
Ga0315277_10000001639F006925N/AVTELTVQVGVLERFGREATLRRKWMKMWDALGERILKMPKWMQNIMLEDINTVVKNRIAIMEMIQNAKRSS
Ga0315277_10000001721F008290GAGMPEKIRLKIGRASYIQRVGEKDYLKTRSRIESVPLRKLVNLARMGGRTWRILQEGNHIFLVLEAISWGEEEKALKKGEYP
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