NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10000004

Scaffold Ga0315277_10000004


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10000004 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)446844
Total Scaffold Genes473 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)337 (71.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003098Metagenome / Metatranscriptome507Y
F007209Metagenome355Y
F043801Metagenome / Metatranscriptome155Y
F058600Metagenome134Y
F102445Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_10000004113F043801N/AMEVIELAKKLMGECPCGFSFITPHGEDDAATMLQYHIERIHKKEYPQGVPKSEALKHVKEVK
Ga0315277_10000004433F003098GAGMAKSIEFVFQFPPIQGVFDTGYGIVYIFGTLHEIEIEDIIAHETLHYVLQKVAGKRTSLKLDRIYNRVESD
Ga0315277_1000000462F007209AGGCGGMLRFRYALTTDGERRCANNEFYLQKTPKYRGYTEKIFKALYDSDPKTIAEISYRTGIDRRAVNGVITFNVMAGYIRRISLSL
Ga0315277_1000000489F102445AGGMANIRHAFFKMNLRQLLFAALMGSLAFAVRNAGFYIIVSYPFRFDPRWVFSLLAACWAGPGGGLIAGTLAAIKFDKFVQADLAAIPAHFFVGLFARLLIQRKINSVYACFLWPLLGVPLYWLATLFFTPAMATITLVPVLAFIGISSALLTFVVGLAVEKRANNLLSFLRI
Ga0315277_1000000495F058600AGGALDRIDKVLLILPFLPVADLLSTLFSLSLGGQEVGILARPILEHYGSTGLVFLATFASAIFLFFMEVVIYIKKMFINEFRFKWMWYVLAVPIFWFFVLEGVYVSTVVMNVLAPFSPLLTQASLLRVIIAGGYFAGVVALTVSQMKRLPRF
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