NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316053_108139

Scaffold Ga0316053_108139


Overview

Basic Information
Taxon OID3300032120 Open in IMG/M
Scaffold IDGa0316053_108139 Open in IMG/M
Source Dataset NameMetatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005057Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0316053_1081391F005057N/ARRPKVRQRMQLVYMGFTQEASLRCFHFQRILTQSRLTNLPKIVQFTLKADMSLFMQHHIPVQEGPAICLQILTDTLAGSEETEIASASYAITKEHLSTFVSARTVIAEAKAARRKPRPPFKPSSSSQLKLPPRIN
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