Scaffold Ga0315305_1119872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0315305_1119872

Scaffold Ga0315305_1119872

Overview

Basic Information
Taxon OID	3300032127 Open in IMG/M
Scaffold ID	Ga0315305_1119872 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_Tmax_529 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	695
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	370
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062808	Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315305_11198721	F062808	N/A	GYFYVRLYWTGFGLPANIVEEYILLSALLHVFVALKRTWDMKLKMGIMSGALNLAISGMLLLTFMTIHLFQFRFGDTSTYFLRPPPYLINFWAILGLRLSLFWCDQSFGDCSDAPTVPVRDIYKLEFEIFQRPTNFPFGSSCGWQPFDAIPALPCTMVPNFWAGFYIFSVIVFMVHVCMGWAKVVPALGIPKGHHRRVNWIGYLIYMTLGAIYISFPAYVMATPRRFCGWE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.