NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315333_10303604

Scaffold Ga0315333_10303604


Overview

Basic Information
Taxon OID3300032130 Open in IMG/M
Scaffold IDGa0315333_10303604 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)756
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009754Metagenome / Metatranscriptome313Y
F041255Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0315333_103036041F009754N/AYHSLKQWWFETSIAVTDVTELNTFVGFAANAYADPVAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFDMKDSAAGSTYTFADSTVTTQSATAYNMPDNNVRLGFLFQPAGTELGQTSAQYKLFLNGNIVGTQAATTVPDDVEIGLNMMIAHKGTVGNDLNIDYVQTVQSRIAGTGVSA
Ga0315333_103036042F041255AGGAGMPNVSAVKAKFFEPQGVSAALVSASAAAATLVIADGGPYGNVTETITLYSSAD
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