NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315333_10400240

Scaffold Ga0315333_10400240


Overview

Basic Information
Taxon OID3300032130 Open in IMG/M
Scaffold IDGa0315333_10400240 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)648
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023211Metagenome / Metatranscriptome211Y
F063067Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0315333_104002401F023211N/AMIRFKQYLKEFAVQSTSDYVFDVPSGHSGGLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLGRLKKLEGGKKTISAFFSMMS
Ga0315333_104002402F063067N/AKNSEGVKFSGTTSEIATMWSGLGKSTGGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRVQEPDPDSGDRPMWDELVVNNFKIKKVHISPEFGPDFEDDDDIDGFPFELYQDERDMVDYINRTVANIKL
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