NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315336_1003491

Scaffold Ga0315336_1003491


Overview

Basic Information
Taxon OID3300032132 Open in IMG/M
Scaffold IDGa0315336_1003491 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20765
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7507Long. (o)-122.0138Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003481Metagenome484Y
F006447Metagenome / Metatranscriptome373Y
F100964Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315336_100349115F003481AGGVAEIDDLRAELERLKATEDKSDKVQMTSGDIVRLVIAAPVVFCWLFLGSRIIISATTSQTVLSNIEPLLLALSILTIPVTAILASLFKVDGNGK
Ga0315336_100349116F006447GGAMTLFEKICRLVGDRKIPVPKMPVFRWFTVGFANKHVTTIVVMAILVSAAAVSVGMYFAIRDVVGSTYNWPEPAQYAVTAAGLETMGKKNPDYADGTESQTLSIRLADGARISTLRIKDTDLGRTGIARALDISPLTSAVTGATAYLWVGNLTVTNSSFPTFKMETSDVANLVTGVLCDGHTMAATITNTVPDMVLESERLSSVYEVNDSVVDRIQIHITGTSGAFVENLILDNVDAWNGEAYFSRLKVGNLTMNNSNKVGDGSGVDSASCNWEPNVAARNITNTIQDRPIKVQ
Ga0315336_100349117F100964AGGMKTVLGLGVMTALVGVVGAGMAVGWAYEGPRRFMRRLKLRKALR
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