NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316583_10166087

Scaffold Ga0316583_10166087


Overview

Basic Information
Taxon OID3300032133 Open in IMG/M
Scaffold IDGa0316583_10166087 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005366Metagenome / Metatranscriptome403Y
F008198Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0316583_101660871F005366AGGAGGMHPLTLQAAIRRHMLDVARQMASGDLLESGKELEEYPLFGDPVVFDQIMRFRAVQSRMWGNETDDTMNDPWRWSAFISHCAVRWMRDPHKWTRDDTDEFYDAMIETAAICAAAAESITRQ
Ga0316583_101660872F008198N/AGEVRSMPLNEIPKYLDPDTRHLVETALEEAWRELNERHRREAAPTKAKLRRTIVALASVGETDTRKLKWFAIHAWRGAMQAEQTEKRARMRAA
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