Basic Information | |
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Taxon OID | 3300032133 Open in IMG/M |
Scaffold ID | Ga0316583_10166087 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 768 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alabama | |||||||
Coordinates | Lat. (o) | 30.2619 | Long. (o) | -88.2383 | Alt. (m) | Depth (m) | 0 to .07 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005366 | Metagenome / Metatranscriptome | 403 | Y |
F008198 | Metagenome / Metatranscriptome | 337 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316583_101660871 | F005366 | AGGAGG | MHPLTLQAAIRRHMLDVARQMASGDLLESGKELEEYPLFGDPVVFDQIMRFRAVQSRMWGNETDDTMNDPWRWSAFISHCAVRWMRDPHKWTRDDTDEFYDAMIETAAICAAAAESITRQ |
Ga0316583_101660872 | F008198 | N/A | GEVRSMPLNEIPKYLDPDTRHLVETALEEAWRELNERHRREAAPTKAKLRRTIVALASVGETDTRKLKWFAIHAWRGAMQAEQTEKRARMRAA |
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