NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316583_10237005

Scaffold Ga0316583_10237005


Overview

Basic Information
Taxon OID3300032133 Open in IMG/M
Scaffold IDGa0316583_10237005 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097604Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0316583_102370051F097604N/AMPQELQIIRASEFIRFNAHGHFDLAASKVALAEVARACRKRGIAHAMMDLRALHPGPKPVFSPADLAELVNSFRAVGFTRQERLAILYGSDPHRRARLFAFLSTMHGYAVRAFGDFESALLWLSSGQEGSADVIGVPPGKRIPVRESKRELRPPARPRTTRAAGAGAQSRARALHR
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