NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_10150870

Scaffold Ga0316201_10150870


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_10150870 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2025
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006015Metagenome383N
F012450Metagenome280N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_101508702F006015N/AMKTAFTFRQALEIVMFIIIVLFSKALKSQVPDSIYYVPFTVTTEETVDTSDSQAFIVYESKILPNTGVMTFEAIDKVMDSTQVSEYAFNLIYRNENLNWLDAARLMKREKLARLYAPVNDIIREMEGYGFFVKTRLKFGDGFEGRWIARINGGDIIWLEVDRLMNVTETTMQGEVIEGGRTGKMLIYTENRFKVQTLFNDVIDFREYWNKELDSDFFVIESDGNKVIMRKID
Ga0316201_101508703F012450N/AMKSIIDKLPNFDSVIKSSGFAVFVMFAMMSAMAYTLWNQYNNMNERLTKLEREVIECYRENMLHNQGIIERNTKVMEEV
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