NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_10322297

Scaffold Ga0316201_10322297


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_10322297 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1336
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033250Metagenome178N
F038464Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_103222972F033250GGAGGMDVNLSTVRQLSPVFEAGGTIDLEVLRPILEQHAASMVEDARTGWPVDTGISREAWQAEIDVSPTELFVSLINEARQRGRGYAVYIHRARSRRLVWTEVAERLNLSLIPALQADIALTLSESMRG
Ga0316201_103222974F038464AGGAMKTITLSPLHDLQIRKPAEWTALVDLTVSWPTDPEDPRFRSRLVRCSAAAIGLVLDDERLPVPAYRTASMDPVAYGVSVLEVLIPQRVQLAEIIRAGREVADWLAGTLPSEQEVS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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