NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_10325348

Scaffold Ga0316201_10325348


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_10325348 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1329
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014252Metagenome264Y
F077986Metagenome / Metatranscriptome117Y
F095399Metagenome / Metatranscriptome105N
F095403Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_103253481F095399N/AHLNNFTMKRKHAMSRWFRKLAHKRYIDRYINELRWDSLNAMITASRTEWNEPVIKLLDNNAHLIRKYERRRRWVKF
Ga0316201_103253483F095403GAGMSENHKLRSVYFLATPKQVDQLIEHGYSIIRNVKHKVYEVRVTDQQQFIRIAEEFDVHTTMSEDAPKGNIEIETTIAGVDFKGVLDKLDRL
Ga0316201_103253484F077986N/AMKEGTLVWIVASVENDAFQANCDENEIAVEPHGYKAMPLYTDKQWVKSLTQEEIEEYNKS
Ga0316201_103253485F014252N/AMNEQEKATKILFYLLVFTIAMFALSVLALVYVYVHPTISLQ
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