NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_10584113

Scaffold Ga0316201_10584113


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_10584113 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)955
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024442Metagenome / Metatranscriptome206Y
F030416Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_105841131F030416AGGMSRRDNTSIRYLLPKTQASIQQYMLDAAMAQFVELSQAHEENRPTLDTLIANTLTPKELKQHEPTL
Ga0316201_105841132F024442AGGAMKNSAKTSGTSIDALVKEGKALGSIWRQTNSLKQTIKANGFDTRLGKLLQELKAQSSSDNGQIPTHVLRTHGIQQIDRRRRSEALWFVENEKECREFIANGNFKGSSLTALQAAMRKAAKGSDEDQPAKAEPSNVGQSDDAPAKAEKAPVKITHKVMVNTIIAQAELNGLDLEKIIEDLMAAIPAAKAAA
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