NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315338_1001908

Scaffold Ga0315338_1001908


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1001908 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23117
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013310Metagenome272Y
F047313Metagenome150Y
F080154Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0315338_100190812F013310AGGAGMEWLSWSNAAYIVAIIVGGALTFAATKYKKVLKEIQEALNTYHEAAKDGTITDEERDKIVKEMLDIASAGVKIFWKF
Ga0315338_100190814F047313GAGGMSEVEVRLRRLEQTKRHQTVASRQQPSIGEMSDGDERIVLAGGKTLRVYRKEFGKLWYIDFTGT
Ga0315338_10019087F080154GGAMKDFFRGLSWVVFLLVLIVIVGVLGQLNGRDMDMYLKAQRINNG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.