NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1008975

Scaffold Ga0315338_1008975


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1008975 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6014
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004699Metagenome / Metatranscriptome427Y
F023636Metagenome / Metatranscriptome209Y
F064110Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315338_10089751F023636N/AYGLKEGGYMLYNIANTPKYKFIEEQTVKISKELGFAQEDTLQLTLSSVMGAGYKYEPIFVFKK
Ga0315338_100897510F064110AGGAGMPRAKKVNSKYTIKKSASRKSAPRRKTTDRRTSNPGDVFWNKVIAGFKKLLSPAFKK
Ga0315338_10089756F004699GGAGMNGAIYALRIKLSDFINDPLDHLVIDKINEINSVRTFKLQLWYDEGEVKPAELKSFIEKYESLLHYKTTIRPNRDADHAQYTWYNIIHNDDKDAKYPCRFQYEHESQWKLGGVLNGLEQFKSTLKFVISDKPSKQEKPLKRKQKRNDYED
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