NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315292_10006097

Scaffold Ga0315292_10006097


Overview

Basic Information
Taxon OID3300032143 Open in IMG/M
Scaffold IDGa0315292_10006097 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7422
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056700Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315292_100060976F056700GGAMFGFLTSPAKEDPDPLLTAKTVSAWLRHLPTLDVIARQHQVMRVFDGMRQSRHPVDLSRVGAIQFLDTALGADRRQLIKQYVENIDGNARLADRAWQAAQELSQGFVYIYQAGLERALADSANPRWKAVIPQLFARLLHFHGTDAKLRVFRHERWIPARWMGLHQLYARASELGVERVAAALPSVGAGAMHWSAEQEYCYVLLVQQLNTGNLSPGNIDWASAQMRAWCRKLEFESLPRSTEGFFVDLAGKRGLMRRTGGESGPMIRYLDTTPLSDQLERAIHALRQTENGDRGTTASVNQHRIAILEKCRPVVAPNLHGDLRRSPRTPVTIAAKVRVGLARICSELTPSELSDAASDADAANEQIEVFSVADSPRTRPPLPDGPDTLMTSIAAFGNPAWQVKDRSVAGLRIAASGGIGQSLVLGALVAVRQADASGWVLGAVRRLSKVSNDEVDAGVSIIAARIVPVSLHVKRAAKDDLGIVVNGIDVSTMGARFDALYLPPPSRPEKPLTVKTLIIPTSEYADGRNVILTTGRSVYTIALRHLVEQRADWSWSAFQIIDKKPMEI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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