NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315910_10000005

Scaffold Ga0315910_10000005


Overview

Basic Information
Taxon OID3300032144 Open in IMG/M
Scaffold IDGa0315910_10000005 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006149
Total Scaffold Genes898 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)126 (14.03%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005710Metagenome392Y
F005768Metagenome / Metatranscriptome391Y
F005797Metagenome / Metatranscriptome390Y
F012636Metagenome / Metatranscriptome279Y
F018754Metagenome233Y
F043995Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315910_10000005111F005710N/AMKLSIKNPSTMKTPGQPNFYFSAYPLKVIKETDTEKRSYLHIYTRSGNKKKYAEGLKVLPMVNPYSQKDETRLEQNLNRQNRPDNVEDRDSDWFASYE
Ga0315910_10000005285F018754N/AMKQFNHKIFIAAVVVGGLFVGVVKGQEARSNWVKKMKTRDERKMKGQNPKEVALDDYEIASFHNN
Ga0315910_100000053F005797N/AMGKIPITTVETNTKLAESLIEDHINNMHHAEKRFEEDKGVLFENFESFTWCCEHSPVEGSIEISYVDPYNSSIKHISVPVETNFGVVCTKEKERNYKITWSYSLS
Ga0315910_10000005399F005768N/AMNHTHSNPTLIHINTDNQIDYSEMYRTQETKQLNKRLRKTRNILLICAAAFVGGAVILWIMPETSFTTKNFLVYSGLAGIMVLLSMISNKQPFFSIVAALVISACFWGFEIFFSDLDGLMVESSIHKLFIISLLVWCFHSSREAELIRKELHFS
Ga0315910_10000005495F012636N/AMVIILIVGIHAFNQQKQFKDIIGRWEIIGEQKDSASLEVIDSSTIILNYMGERKKITDYKIDFQKSPIWFDFSTQDTSSSIIIKSLLEIVNDSMIKWQLFLDEERTDHFSSTKGELYYLRKAKPAISTSVVSNAN
Ga0315910_10000005712F043995N/AMKFFSWLGFILIVLAIIAAITSPSDTKFAEFISKDEGGDTMSCKPIIGKTTEIKLFVKLASIKYASFCESQTPLIINDKTGRKITTNYSVPKITRSETYLGLFGRFWKL
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