NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315910_10000323

Scaffold Ga0315910_10000323


Overview

Basic Information
Taxon OID3300032144 Open in IMG/M
Scaffold IDGa0315910_10000323 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50022
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (11.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005232Metagenome / Metatranscriptome407Y
F008586Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0315910_1000032324F008586N/AMNKLLLPIKLSTVTENMLSIQDFLKNSYNEKKEWLAESIAFFKDFAQMEEEFRQELMNRNEYCICIEGEMLSEKDILSRPMEENY
Ga0315910_1000032334F005232N/AMKKIFCAAIILAAAYTMSAQEVVMYKTTSEFDYSGQVPASIKANFAANNPTTATITWMPMTSDWWYATYKTDNNRIVRVYYNTQPWYMMRGESFKASLPVLNTYVPDVVITNAINTYGNNLYSITRRLSNGNDEMYHVTIIKNGTSEIALMNAQGVVYTDINQSSQH
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