NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315304_1080064

Scaffold Ga0315304_1080064


Overview

Basic Information
Taxon OID3300032145 Open in IMG/M
Scaffold IDGa0315304_1080064 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_1000m_313 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004794Metagenome / Metatranscriptome423Y
F074966Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315304_10800641F004794GGAGMSGSWDIATATSIGTGTAKTTINGGNNVTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLELDSFSVDLLPKRIIVPAIQSGLGTTITQVNPLLEAYECNTGLQEGATSQFIISGTNQTAPTVATNLACALHYSTTPPNRPEHFYHK
Ga0315304_10800642F074966GGGGGMGLPEQAAIGRIGTKIIYGGAVGVFFDPPSPRGRVSTYAVTPNVMVQNRATTDRSYGVARRNRNIVPLDSFDYSTGSAFR
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