NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315304_1161280

Scaffold Ga0315304_1161280


Overview

Basic Information
Taxon OID3300032145 Open in IMG/M
Scaffold IDGa0315304_1161280 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_1000m_313 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072260Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0315304_11612801F072260N/AIDSERWPRFICKPVYGQEGIDATFFEPKHKKSLARYFERCMKKYPGLIVQKEIPDFGNSKKSPELRLYYVGRDYQYAVCANDNCIVRPVLEGGRLDCPLESLKKCSRKILRKLPKITMKNGKELPRLLTRLDMGYIVDGNYKPFVNEVEFVPSLYSEDCAHAKDGSRQIEARLGDQMVRITKLYKA

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