NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315912_10037143

Scaffold Ga0315912_10037143


Overview

Basic Information
Taxon OID3300032157 Open in IMG/M
Scaffold IDGa0315912_10037143 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - V. faba soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3894
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → unclassified Haliangium → Haliangium sp. UPWRP_2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058015Metagenome135Y
F080669Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315912_100371431F080669N/AARRCAAAAAGERNGRTGRRQGKSKGTASMKSTLVVMSSNREPERQTRNTLQDLAKLGAMLLMEIGSADVAFARCRALSWACQKLREYPDRDIVLMLDDDMEVPAETALALANKARELGRACSAVYATLTAKVAASRWPGHPGLWLVGLGCIAIPRARLLDLEQRSRSFELDGRSYRAFTWSGPENGSWIAEDFRLSINLGGVHLCPLPVGHIKKGALWPDDETIELLGRAPL
Ga0315912_100371432F058015GGAGMTDSPIRLSPSGPIIGKVPTPGPGARIRLTEATSTMGGSQAFPSVPDVIGPNGFGAPAALILTLDAPKEALRYRANLSLDVRNTATSPGGEVVLYLDISLDGGTTYTNWAKNVHSVNSSHTDFPEARQMQVWLPLTPGSNIGVRDATPPPSIKLRARANQTIGSSAVEVDSHSTSGGSSPVADLNGTIHMELEECL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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