NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10009527

Scaffold Ga0268251_10009527


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10009527 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2667
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003251Metagenome / Metatranscriptome497Y
F055487Metagenome138N
F074494Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100095273F074494AGGVEIRGIPFCEACAREQEVYFAIGELTQEQKRDLRGEPLSKSLGETLGEMLSGMRHQRKDDLAGARRLDLPRVDKPGSLRLRKAKHSQPENRQNRGRRPNGVEHMSEDAQVLIRAAREVHIERHGAQTFLPGTYLSFLEAAKRTGIRSDRQRYHDAIDDLEYEGAIEWDKSARYARGDKHYLITQRGLHDLGSA
Ga0268251_100095274F003251AGGAMKTRTYMTEEAAKKAAARAYRPAIVRLPNGRYACFQAGDALPQGARAVSRWGTDRWRAYN
Ga0268251_100095275F055487GGAGMAEQIPEAWIGQEVTVYFGLEGYRQPGILKSVSERGIVVQSGQEGAEEHVFWYPHTSVLRLMQGRPRGAEVRSY
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