NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10075937

Scaffold Ga0268251_10075937


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10075937 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100759372F023050GGAGGMRSWIRRLERAASEDLDSFELLDGSTYYFDRLETYGELFVHACDLQLGRGEWPEPPEVYRKMCEAKDPAAVLERFRPEDPERAFVNVAELYDTEVLVNERRLVPIYHPPVEDLSE
Ga0268251_100759373F095025GGAGMGLRSKLRRLEDRAQAIAAQTREDQKLEREHAIMRMIVDKFAHLKACGELSDGDPLAQAVRNVVAAQYADLGERLCEYIADGWIDTLREWTRLDWMVKAGRNGGPHA
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