NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10078921

Scaffold Ga0268251_10078921


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10078921 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001016Metagenome805Y
F001264Metagenome / Metatranscriptome735Y
F002864Metagenome / Metatranscriptome525Y
F026817Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100789211F002864N/ARMSEQEPVRIPREVLEELESVRRYTRAEVLDIPTIRHVAMETHKPVLVMWIDKHEQEYGKGLLNGFLAED
Ga0268251_100789212F001016AGGMGPQDPKDVTRDTARDLSALVGELAALKGDATHWLTDPEYAALRHRLEAAHAAVEAALVEARRSVRLNEG
Ga0268251_100789213F026817GGAGMNLGYDLCEVRSGLSAEELWNVEKYFREQGVSEFVYDEQLDVLRFPEDGRFAFCQEFADWERLQELGYLHF
Ga0268251_100789214F001264AGGAGMRAEQTVNEMAQVVLSRQARALAQGPGETLDEALEAVVETPAGRHLEELRGGVHQHEEARYWQANLLFERVSEQAGHPA
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