 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032160 Open in IMG/M |
| Scaffold ID | Ga0311301_10001875 Open in IMG/M |
| Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 80170 |
| Total Scaffold Genes | 77 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (80.52%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005307 | Metagenome / Metatranscriptome | 405 | Y |
| F005675 | Metagenome / Metatranscriptome | 393 | Y |
| F013877 | Metagenome / Metatranscriptome | 267 | Y |
| F068027 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311301_100018751 | F068027 | AGG | MIKQVLLLLLLGAPLACASDYFVDCNYGSNGNPGTGTQQAWRTLLQVGISSFQPGDTINLRRDCTWNETLTPPSSGNSDSLIKIDSYGNGQPAHLTGYLPIAAQWWTQVGSTNVWSATLYSATSGLANVVQCGIRGFYCLTQPPSQLQYVRFGTVWGTAQGNQAALSQDRDFWYDSTNYMLYVYSASGNPAAHYATVAPIVLSGESVLNVNGVSWMEIQHLQIDWFDGYGVQVQGGSDHLWLANLAADSQVENGAVPLGFYVQPTGKPVDIHLYNTDANMNYAGYHFDGCSSGGCAFEIKNCRAYANRAYGIVDNVQGAVSYDYCYLYANNLATALTVDTSGTPGPTAGTHNIAAETPPWIREWHRWPGYTTVSYDDPGLVQYSDTYISSLLPV |
| Ga0311301_1000187534 | F005675 | GAGG | MWIRESERNVHWNWTVIFSYAASLALSLAIWGGLFRAVEHLVK |
| Ga0311301_1000187577 | F005307 | GGA | MDRGTAVRAALMAGVLGVFIQMIPLLGIVLTGALAVFFYRRESRIVLPTALGSRLGGAAGVAAFAINALLITIRIFVFHAQQEYIDFLTRFAHTVGANAADPDFQAGIHSLLTPSGLAITFLFGMIIAAVLASVGGALASLFLRPRNPRA |
| Ga0311301_100018759 | F013877 | GAGG | MKFISEMVGQEIHVELKYCERCGGLWLRPQGSDGVYCVGCRAHLEAMPNPGEPPARKARLRRRVRAQKEGTNIQKDVQGEDLRNPARIESLEGVAAMEVQA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |