NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10002779

Scaffold Ga0311301_10002779


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10002779 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65647
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (80.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004553Metagenome / Metatranscriptome433Y
F014038Metagenome / Metatranscriptome266Y
F056257Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000277948F014038GAGMKLTLEDALSLLSKYGGERTPVIAVLGTPSVSVARVAGTIRVSSVQGVPCLVIGKENSESDQIKFWLSDCEFAYGDFRDEESAALKFEGFLP
Ga0311301_1000277966F056257N/AMAKMTKLHVHGEPVADYVGRSTNPGDAEVTYRLMSDGVLLKQTARTRYSEVRIKQVTHKSGWKIAKVTPEIRANHDLPLTQGFQKE
Ga0311301_1000277973F004553AGCAGVAGALLLFVAAPLVHADDGAKCQHAIEKAEARLDKAIHDKGEHSREAEDRRRDLNAERERCWNANHQWWNGKEHRWETEHNWEQDHH
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