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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032160 Open in IMG/M |
| Scaffold ID | Ga0311301_10003075 Open in IMG/M |
| Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 62306 |
| Total Scaffold Genes | 81 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (85.19%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044616 | Metagenome | 154 | Y |
| F046497 | Metagenome / Metatranscriptome | 151 | Y |
| F092532 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311301_1000307536 | F044616 | AGGAGG | LSTKVSIALSASETIECPLCNGAGELSRAEILDRLGVKDFARVAQLSAEEAFRLLQNRHDREHQNAWSRFETELAKRTAEIRESLGGELRLALSEKDSLTRRVEDSFREIGQLREKNHELEAQMSKVARVGKREEMDFAEEARTWAGICISDKLSRNGDFILSYRAPNGDLTEPKILIDNKDKSVVAESDIDKIVRDARERSIGVAALVARDETQLRQVDRDSRWSRKEGVWLLRTTRQWIVRDLDLLKPIFERMRVHGFDLLERNAILAEELRRTFPEIDRIERELGKAAKAIQSVSALVVRYRERLRDLCDTAPSARIAPKPELNSDVRKIVGA |
| Ga0311301_1000307544 | F046497 | GGAGG | VRLRRVFRDGCGNFASLAFVVLLCVLTATGQGAAPETAPPLFPGGGLISYNSIFTTRGLTSGSSAKIPATARPTFAHEGDFNFTWGFHRNFDLTILVPIVTNHFRMIGTSTVGGTGLGDTMLLLKYRIYRRDSQRGTTQASVSFAPKLPTGRTDLRDTTGSLLPATLQPGSGSTDLFLAANWTYTGLFNLRRLVADEDFHSLIRSEGTQQTRLGSDIESRFWLSYRPYESKNVAREWFIGSALTWLHSQDDRIVGVAQNGSGGDVLLAGIATYVGLRPGMHAWVGMDWDVAHTTGAQFMPLRRHVSFGITQQFRLHF |
| Ga0311301_1000307566 | F092532 | GGAGG | MTIKVGHKRSNRRTQSTMASKQTSTRGTGKGQKLLSGTRDQLIKDLQRIHKVFPTAQPDRDFYRVHGKYTDAAVKVHFSRFKDFAAAAMPEMTPDEAFKLVVRSLDRAIDLIQKWHEDAEYGEGWVKHQIDAVNARVHELDELFYMWRLIKEMDEEDAAGVEVEEPKHPAQDETIPPVKLEMPKESK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |