NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10005848

Scaffold Ga0311301_10005848


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10005848 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42527
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014927Metagenome / Metatranscriptome259Y
F056131Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000584810F014927AGGAGGMAQPRRHPVRATDYFSFAGFDWMRLTSRTPSLTAGANKLSLLAGLTAGLAYSTFASFVANALTPVSGYLVEGDSFRRAVSGHYQEVLSLNGAISTVLVSLIVFVLVWRTTRVILENWQSSDGQRIESIGSSLSSDGGLLTPVTIAPLAVVVTK
Ga0311301_100058487F056131GGAGGMLRNVRKSLCISAASGLLIVATGISGCSMFSPSNVPVDCDAVKQQQQAGQSDSQIADNLNSSVDKVAACHGPETEGNKQTVIPEKGY
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