NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10009214

Scaffold Ga0311301_10009214


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10009214 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32074
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (81.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002004Metagenome / Metatranscriptome605Y
F005523Metagenome / Metatranscriptome398Y
F046224Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100092141F005523N/AAPAVLIFFIAGLLYLLRFKRVDNLGAYRIPPETGILIPSDYVTTG
Ga0311301_1000921435F046224GGAMLLLLFLSMLIGWLIGGPDPESRRVLATSTGMRSVIVVLYVARYCFPGTGVYMIPIVYISLMVPTNLLFHLAFTGWHKLRPAAEVYGDSGD
Ga0311301_100092147F002004GGTGGMKKIPNLGRPLGEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQAKDVAEWLRNTEDIALTLYWSKTRPRK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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