NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10010414

Scaffold Ga0311301_10010414


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10010414 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29739
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000063Metagenome / Metatranscriptome2803Y
F006638Metagenome / Metatranscriptome368Y
F015758Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1001041411F006638N/AMDYEKMKALMEASREESAVQHKPKVKEFPQPDSWPDWKYLGYVAEGRRAA
Ga0311301_1001041425F015758GGAGMNDAPIMTNNGLAQAAKHELKGRIRRIHLEDALVELACGLCMEAVPVETAFQRIQDKALETLVPLLDTKILGNAEAVQGCLELVAEESERVAWKALQKGTEMLEEGLAILEEGELELPEGGYVN
Ga0311301_100104148F000063GGAGGMLDQGVWAEVKVGGEHLRLFSEQNAIGVQASVYNVTAKNWIAPSEPVEDIEQGKDRATAHAADYLLRVTNMKMPPLVWKKSRSV
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