Basic Information | |
---|---|
Taxon OID | 3300032160 Open in IMG/M |
Scaffold ID | Ga0311301_10025565 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 15933 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F033533 | Metagenome / Metatranscriptome | 177 | N |
F034638 | Metagenome / Metatranscriptome | 174 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0311301_1002556513 | F033533 | N/A | VTFERKIVVGLEEIRAITFECHKCKSRLMVSPDDIRDIPIACPHCNFSWRLPEDPSAVPSGSLPKAFAFGIRELKIRFGADVIGFKILLEFDEPGRGTQ |
Ga0311301_100255654 | F034638 | N/A | MAQVTLKVKIQSTPMERQLLFAKLNERAAPHHIQFVLVESGFDYRVAYGVAGPVMTPYGPAAASASVTKVFDPAGAQLFTFSRDGRWTPDAAANATAKEIIKRIRKLRGLD |
⦗Top⦘ |