NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10082540

Scaffold Ga0311301_10082540


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10082540 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6562
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066094Metagenome127Y
F073970Metagenome / Metatranscriptome120Y
F095791Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100825404F095791N/AMRRRLVGGIYVVEAAKDGVTEYWAAATLQENAVAAVEKELGPGRTVTLTDRRLTNQRLSILKMLPNTVRKL
Ga0311301_100825405F073970GAGGMPAIQPPTGPIEISDPNNVPELFVNGPFNVMNVGGMVYLTLTAARPKPNDLFKASTTPEFQATIACRLLMPSEMAEQLTRTLADSLIKASQQTRATPQTVAEPTDKLDNWPDRLSRDNARYRS
Ga0311301_100825408F066094GAGGMDEKWRVSHVELLEGGLLFGLVLYDEKGRPCVSFGYSGRAKADLSRNHVAAALKDAEQVLGR
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