NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311301_10233966

Scaffold Ga0311301_10233966


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10233966 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3066
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F010114Metagenome / Metatranscriptome308Y
F036885Metagenome169Y
F094236Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_102339661F094236N/ARCPACRTVRAALLSIANLVPADLAVGANFPTYNIDSHSGEILCLPALGNRAAVWVSIYLSWNRSNGQSLETDLLTEVRTLLNKWGIHQR
Ga0311301_102339663F001596AGGAGMSWFHSSTAPVDARNHASPAEVVACFQDQGNDLRQLALLITGDRATADQAVLEACEITLQGNSPFRDWLFEWAKAATIASAILHGLKAIRICEATYKDQRCLHVEHLSQGDAEERAAGLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSLQDCALRLNVSRAAVLAANCHALTWLHDSHARSVEENHDASLTV
Ga0311301_102339664F010114GAGGMIIELNDDDTRLLHTVLLEQAQEHLSYADTSEVAERLYRLATRFERPPTWAK
Ga0311301_102339665F036885GGGGGMADKKDRERVIAEITLSHLMRLGNEQGCPVSREQALAFLNHQGRAFEMWKHMMQAAEEFIANSLFQHSFSSGGHNGFASRPRPVRSVGNAAL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.