NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10242692

Scaffold Ga0311301_10242692


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10242692 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2989
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012611Metagenome / Metatranscriptome279Y
F040253Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_102426921F012611GAGMDCLAKFRIGTLLVLVAASPSLLAQNTAPHKDQIHAPVLDVREIVIQSIAATERSWQARDTYTFMERDEDRRLDDLGKLKSEDVDLTRMILINGARFEQLIEHNGQLPSPAAQKKSDEDLDKLKHETPDEQAIRLRKDQENRSFLHDLLDAFDFQLLGEETIDKRPAYMLLATPHPGYRAHGKYAKL
Ga0311301_102426923F040253GGAGGMKKKTKKESNEATRASVTREMAKPRMARSAREGEKMIAAARIAPGKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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