NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10421883

Scaffold Ga0311301_10421883


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10421883 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2028
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006278Metagenome / Metatranscriptome377Y
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_104218832F017965N/AMEKKHEPRTQLDNNYLPVESVCSNRIALTDMSEKIGHRDALYLFACHLEWLTKRNLAAYQDLLAALDDHDGDIRRLAEYLLHRSSPRPERTATGIGSW
Ga0311301_104218833F006399GGAMVTPALNSRVQSLVTEYGVFWQFWPQFEQTHGERRPVGFEVELIGSHTSDLNHVDPACPTCRHVRSLLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR
Ga0311301_104218835F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQVRCLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGAVFVAGNVYAIAVCDRLGLSPMQRISERRKGRHGNNEERSAIRHSHP
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