NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10677929

Scaffold Ga0311301_10677929


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10677929 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F015081Metagenome257Y
F087856Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_106779292F087856GGCGGMSRLRRADYTEPLAGKTIKRVHWNNDEKWRRLTLEFTDQTLCSFRFELAVDEEAELADFASGDPSKHRKLIPLPLVRQPIKPLV
Ga0311301_106779293F001432AGGAGGMSLEKEYVRDGRRQIIGSVTSGFSDTSAVVRDEDNKLSGRTSERYDTTRDDHGNLVSINSPDPGLLIGGDDE
Ga0311301_106779294F015081GGAVHAHYSGDEEISVEDLIEEQRRLSHSKDHCERVLGSLCIGAILKERLVALPNSTIGRLMTDYVWSDLNLLGPASVIVEIASERLIEKYGTSLVCPECGAEFGRAK
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